Also see the Glossary page.
Brain Info is designed to help you identify structures in the brain.
NIF, the Neuroscience Information framework, is a dynamic inventory of web-based neuroscience resources.
OBART The Online Brain Atlas Reconciliation Tool (OBART) aims to provide a quantitative solution to the so-called neuroanatomical nomenclature problem by comparing overlap relations between regions defined as spatial entities in different digital human brain atlases.
BIDS Brain Imaging Data Structure links
Cyverse Cyberinfrastructure supporting online customizable virtual machines (Atmosphere), containerized apps (Discovery Environment) and data storage (Data Commons). You must request access to each service separately.
GIT Repositories An excellent set of tutorials introducing the concept of code repositories and how to use them. Examples use Gitkraken which is a graphical git client available for free to academics.
HPC Documentation University of Arizona High Performance Computing Documentation
Jupyter Org A free online unix terminal and Jupyter Notebook server.
OpenNeuro A site that implements BIDS apps in an easily accessible gui interface. The catch is that you have to make your data public after a couple of years.
REDCap A fully IRB-approved HIPAA-compliant web database application freely available to U of A researchers for capturing and querying data (e.g., we could have potential participants fill out their MRI screening here).
SCIF The Scientific Filesystem
Instructional: Neuroimaging Software and Concepts¶
Andy’s Brain Book Andrew Jahn’s Read The Docs pages
Andy’s Brain Blog Online tutorials and videos on a variety of topics: Afni, Eprime, Freesurfer, FSL, FSLeyes, Unix
FMRIF Summer 2017 Course Materials fMRI powerpoints and video presentations
GIFT Resources related to the GIFT ICA Matlab processing toolbox: presentations, a manual, sample data, a short video etc.
Standard fMRI Analysis Tutorials Rajeed Raizada provides some excellent interactive Matlab tutorials for MVPA (multi-voxel pattern analysis) and SPM fMRI analysis.
Resting State Analyis: How To Online resource from Jeanette Mumford et al.
NITRC, the Neuroimaging Tools and Resource Collaboratory, is a huge database of neuroimaging tools and datasets.